IL_8VTW_178

3D structure

PDB id

8VTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

GGGAG*CGUGGAUC

Length

13 nucleotides

Bulged bases

8VTW|1|2A|G|100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VTW_178 not in the Motif Atlas

Homologous match to IL_8VTW_004

Geometric discrepancy: 0.0525

The information below is about IL_8VTW_004

Detailed Annotation

Kink-turn

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

8VTW|1|2A|G|81
8VTW|1|2A|G|82
8VTW|1|2A|G|83
8VTW|1|2A|A|84
8VTW|1|2A|G|85
*
8VTW|1|2A|C|97
8VTW|1|2A|G|98
8VTW|1|2A|U|99
8VTW|1|2A|G|100
8VTW|1|2A|G|102
8VTW|1|2A|A|103
8VTW|1|2A|U|104
8VTW|1|2A|C|105

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 22

50S ribosomal protein L29

Chain 2Y

50S ribosomal protein L24