IL_8VTW_189

3D structure

PDB id

8VTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

UUAAG*CGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VTW_189 not in the Motif Atlas

Homologous match to IL_8VTW_015

Geometric discrepancy: 0.046

The information below is about IL_8VTW_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66798.1

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8VTW|1|2A|U|606
8VTW|1|2A|U|607
8VTW|1|2A|A|608
8VTW|1|2A|A|609
8VTW|1|2A|G|610
*
8VTW|1|2A|C|618
8VTW|1|2A|G|619
8VTW|1|2A|G|620
8VTW|1|2A|A|621
8VTW|1|2A|G|622

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15