3D structure

PDB id
8VTW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.35 Å

Loop

Sequence
CGAUG*CUAAG
Length
10 nucleotides
Bulged bases
8VTW|1|2A|U|1420
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8VTW_226 not in the Motif Atlas
Homologous match to IL_8VTW_054
Geometric discrepancy: 0.0681
The information below is about IL_8VTW_054
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_89002.4
Basepair signature
cWW-tWH-cWW-L-cWW-tHS
Number of instances in this motif group
15

Unit IDs

8VTW|1|2A|C|1417
8VTW|1|2A|G|1418
8VTW|1|2A|A|1419
8VTW|1|2A|U|1420
8VTW|1|2A|G|1421
*
8VTW|1|2A|C|1577
8VTW|1|2A|U|1578
8VTW|1|2A|A|1579
8VTW|1|2A|A|1580
8VTW|1|2A|G|1581

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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