IL_8VTW_238

3D structure

PDB id

8VTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

ACUCUG*CUGU

Length

10 nucleotides

Bulged bases

8VTW|1|2A|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VTW_238 not in the Motif Atlas

Homologous match to IL_8VTW_066

Geometric discrepancy: 0.042

The information below is about IL_8VTW_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

8VTW|1|2A|A|1669
8VTW|1|2A|C|1670
8VTW|1|2A|U|1671
8VTW|1|2A|C|1672
8VTW|1|2A|U|1673
8VTW|1|2A|G|1674
*
8VTW|1|2A|C|1990
8VTW|1|2A|U|1991
8VTW|1|2A|G|1992
8VTW|1|2A|U|1993

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2O

50S ribosomal protein L14