IL_8VTW_287

3D structure

PDB id

8VTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

CGAUGGUAC*GGAGAGUAG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VTW_287 not in the Motif Atlas

Homologous match to IL_8VTW_114

Geometric discrepancy: 0.0383

The information below is about IL_8VTW_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_56455.5

Basepair signature

cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8VTW|1|2B|C|71
8VTW|1|2B|G|72
8VTW|1|2B|A|73
8VTW|1|2B|U|74
8VTW|1|2B|G|75
8VTW|1|2B|G|76
8VTW|1|2B|U|77
8VTW|1|2B|A|78
8VTW|1|2B|C|79
*
8VTW|1|2B|G|98
8VTW|1|2B|G|99
8VTW|1|2B|A|100
8VTW|1|2B|G|101
8VTW|1|2B|A|102
8VTW|1|2B|G|103
8VTW|1|2B|U|104
8VTW|1|2B|A|105
8VTW|1|2B|G|106

Current chains

Chain 2B

5S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2Q

50S ribosomal protein L16

Chain 2Z

50S ribosomal protein L25