Motif IL_56455.5 Version IL_56455.5 of this group appears in releases 3.88 to 3.90

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5		6		7		8		9	break		10		11		12		13		14		15		16		17		18	1-18	2-17	3-16	4-15	6-13	7-12	8-11	9-10
1	IL_364D_003	364D	0.2030	0	Bacterial 5S Loop E	C+B	RNA (31-mer)	C	97	G	98	A	99	G	100	A	101	G	102	U	103	A	104	G	105	*	C	71	G	72	A	73	U	74	G	75	G	76	U	77	A	78	G	79	cWW	tSH	ntHW	cBW	ntWH	tWH	tHS	cWW
2	IL_1FEU_001	1FEU	0.1375	0	Bacterial 5S Loop E	C+B	21 NT FRAGMENT OF 5S RRNA	C	97	G	98	A	99	G	100	A	101	G	102	U	103	A	104	G	105	*	C	71	G	72	A	73	U	74	G	75	G	76	U	77	A	78	G	79	cWW	tSH	tHW	cBW	ncWB	tWH	tHS	cWW
3	IL_354D_001	354D	0.0590	0	Bacterial 5S Loop E	B+A	RNA-DNA (5'-R(GPCPGPAPGPAPGPUPAP)-D(DGP(S))-R(GPC)-3')	C	97	G	98	A	99	G	100	A	101	G	102	U	103	A	104	DG	105	*	C	71	G	72	A	73	U	74	G	75	G	76	U	77	A	78	G	79	cWW	tSH	tHW	cBW	cWB	tWH	tHS	cWW
4	IL_1DFU_001	1DFU	0.0000	0	Bacterial 5S Loop E	M+N	5S RRNA	C	97	G	98	A	99	G	100	A	101	G	102	U	103	A	104	G	105	*	C	71	G	72	A	73	U	74	G	75	G	76	U	77	A	78	G	79	cWW	tSH	tHW	cBW	cWB	tWH	tHS	cWW
5	IL_5J7L_359	5J7L	0.1247	0	Bacterial 5S Loop E	DB	5S rRNA	C	97	G	98	A	99	G	100	A	101	G	102	U	103	A	104	G	105	*	C	71	G	72	A	73	U	74	G	75	G	76	U	77	A	78	G	79	cWW	tSH	tHW	cBW	cWB	tWH	tHS	cWW
6	IL_8VTW_114	8VTW	0.1332	0	Bacterial 5S Loop E	1B	5S rRNA	G	98	G	99	A	100	G	101	A	102	G	103	U	104	A	105	G	106	*	C	71	G	72	A	73	U	74	G	75	G	76	U	77	A	78	C	79	cWW	tSH	tHW	cBW	ncWB	tWH	tHS	cWW
7	IL_7A0S_106	7A0S	0.1589	0	Bacterial 5S Loop E	Y	5S rRNA	G	100	A	101	A	102	A	103	A	104	G	105	U	106	C	107	G	108	*	C	73	A	74	A	75	U	76	G	77	A	78	U	79	A	80	C	81	cWW	tSH	tHW	cBW	ncWB	tWH	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CGAGAGUAG*CGAUGGUAG	5
GGAGAGUAG*CGAUGGUAC	1
GAAAAGUCG*CAAUGAUAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAGAGUA*GAUGGUA	6
AAAAGUC*AAUGAUA	1

Release history

Release	3.88	3.89	3.90
Date	2024-09-11	2024-10-09	2024-11-06
Status	Updated, 1 parent	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Bacterial 5S Loop E (7)
Basepair signature: cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
Heat map statistics: Min 0.06 | Avg 0.14 | Max 0.24

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Coloring options: Nucleotide numbers

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