#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 7 8 9break 10 11 12 13 14 15 16 17 181-182-173-164-156-137-128-119-10
1 IL_7A0S_1067A0S0.15890Bacterial 5S Loop EY 5S rRNAG100A101A102A103A104G105U106C107G108*C73A74A75U76G77A78U79A80C81cWWtSHtHWcBWncWBtWHtHScWW
2 IL_8VTW_1148VTW0.133201B 5S rRNAG98G99A100G101A102G103U104A105G106*C71G72A73U74G75G76U77A78C79cWWtSHtHWcBWncWBtWHtHScWW
3 IL_5J7L_3595J7L0.12470Bacterial 5S Loop EDB 5S rRNAC97G98A99G100A101G102U103A104G105*C71G72A73U74G75G76U77A78G79cWWtSHtHWcBWcWBtWHtHScWW
4 IL_1DFU_0011DFU0.00000Bacterial 5S Loop EM+N5S RRNAC97G98A99G100A101G102U103A104G105*C71G72A73U74G75G76U77A78G79cWWtSHtHWcBWcWBtWHtHScWW
5 IL_354D_001354D0.05900B+ARNA-DNA (5'-R(*GP*CP*GP*AP*GP*AP*GP*UP*AP*)-D(*DGP(S)*)-R(*GP*C)-3')C97G98A99G100A101G102U103A104DG105*C71G72A73U74G75G76U77A78G79cWWtSHtHWcBWcWBtWHtHScWW
6 IL_1FEU_0011FEU0.13750Bacterial 5S Loop EC+B21 NT FRAGMENT OF 5S RRNAC97G98A99G100A101G102U103A104G105*C71G72A73U74G75G76U77A78G79cWWtSHtHWcBWncWBtWHtHScWW
7 IL_364D_003364D0.20300Bacterial 5S Loop EC+BRNA (31-mer)C97G98A99G100A101G102U103A104G105*C71G72A73U74G75G76U77A78G79cWWtSHntHWcBWntWHtWHtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGAGAGUAG*CGAUGGUAG5
GAAAAGUCG*CAAUGAUAC1
GGAGAGUAG*CGAUGGUAC1
Non-Watson-Crick part of the motif
SequenceCounts
GAGAGUA*GAUGGUA6
AAAAGUC*AAUGAUA1

Release history

Release3.883.89
Date2024-09-112024-10-09
StatusUpdated, 1 parentExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Bacterial 5S Loop E (5)
  • (2)
  • Basepair signature
    cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
    Heat map statistics
    Min 0.06 | Avg 0.14 | Max 0.24
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