IL_8VTW_298

3D structure

PDB id

8VTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

8VTW|1|2a|U|244, 8VTW|1|2a|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VTW_298 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.0629

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

8VTW|1|2a|C|242
8VTW|1|2a|A|243
8VTW|1|2a|U|244
8VTW|1|2a|C|245
8VTW|1|2a|A|246
8VTW|1|2a|G|247
*
8VTW|1|2a|C|277
8VTW|1|2a|G|278
8VTW|1|2a|A|279
8VTW|1|2a|C|280
8VTW|1|2a|G|281
8VTW|1|2a|A|282
8VTW|1|2a|C|283
8VTW|1|2a|G|284

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2l

30S ribosomal protein S12

Chain 2q

30S ribosomal protein S17