IL_8VTW_359

3D structure

PDB id

8VTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

8VTW|1|2A|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VTW_359 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.0606

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

8VTW|1|2A|C|844
8VTW|1|2A|G|845
8VTW|1|2A|C|846
8VTW|1|2A|U|847
8VTW|1|2A|G|848
8VTW|1|2A|A|849
8VTW|1|2A|C|850
*
8VTW|1|2A|G|927
8VTW|1|2A|G|928
8VTW|1|2A|U|930
8VTW|1|2A|G|931
8VTW|1|2A|G|932
8VTW|1|2A|A|933
8VTW|1|2A|G|934

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 1P

50S ribosomal protein L15

Chain 23

50S ribosomal protein L30