IL_8VTW_364

3D structure

PDB id

8VTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

GGAAU*GGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VTW_364 not in the Motif Atlas

Homologous match to IL_5J7L_361

Geometric discrepancy: 0.0427

The information below is about IL_5J7L_361

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

8VTW|1|2a|G|673
8VTW|1|2a|G|674
8VTW|1|2a|A|675
8VTW|1|2a|A|676
8VTW|1|2a|U|677
*
8VTW|1|2a|G|713
8VTW|1|2a|G|714
8VTW|1|2a|A|715
8VTW|1|2a|A|716
8VTW|1|2a|C|717

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2f

30S ribosomal protein S6

Chain 2k

30S ribosomal protein S11

Chain 2r

30S ribosomal protein S18