IL_8VTX_076
3D structure
- PDB id
- 8VTX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with macrolone MCX-128, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- CGAAA(5MU)UC(5MC)UUG*C(5MC)UG
- Length
- 16 nucleotides
- Bulged bases
- 8VTX|1|1A|A|1938, 8VTX|1|1A|C|1941, 8VTX|1|1A|U|1944, 8VTX|1|1A|U|1963
- QA status
- Modified nucleotides: 5MU, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VTX_076 not in the Motif Atlas
- Geometric match to IL_4WF9_077
- Geometric discrepancy: 0.1132
- The information below is about IL_4WF9_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_84014.1
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-tSW-L
- Number of instances in this motif group
- 8
Unit IDs
8VTX|1|1A|C|1934
8VTX|1|1A|G|1935
8VTX|1|1A|A|1936
8VTX|1|1A|A|1937
8VTX|1|1A|A|1938
8VTX|1|1A|5MU|1939
8VTX|1|1A|U|1940
8VTX|1|1A|C|1941
8VTX|1|1A|5MC|1942
8VTX|1|1A|U|1943
8VTX|1|1A|U|1944
8VTX|1|1A|G|1945
*
8VTX|1|1A|C|1961
8VTX|1|1A|5MC|1962
8VTX|1|1A|U|1963
8VTX|1|1A|G|1964
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1D
- 50S ribosomal protein L2
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 1w
- Transfer RNA; tRNA
Coloring options: