IL_8VTX_103
3D structure
- PDB id
- 8VTX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with macrolone MCX-128, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- CCUCU*AUG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VTX_103 not in the Motif Atlas
- Homologous match to IL_8VTW_103
- Geometric discrepancy: 0.0379
- The information below is about IL_8VTW_103
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.9
- Basepair signature
- cWW-cWS-cHS-L-cWW-tWH
- Number of instances in this motif group
- 15
Unit IDs
8VTX|1|1A|C|2680
8VTX|1|1A|C|2681
8VTX|1|1A|U|2682
8VTX|1|1A|C|2683
8VTX|1|1A|U|2684
*
8VTX|1|1A|A|2725
8VTX|1|1A|U|2726
8VTX|1|1A|G|2727
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1E
- 50S ribosomal protein L3
- Chain 1O
- 50S ribosomal protein L14
- Chain 1R
- 50S ribosomal protein L17
- Chain 1T
- 50S ribosomal protein L19
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