IL_8VTX_125
3D structure
- PDB id
- 8VTX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with macrolone MCX-128, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- CAUCAG*CGACGACG
- Length
- 14 nucleotides
- Bulged bases
- 8VTX|1|1a|U|244, 8VTX|1|1a|C|280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VTX_125 not in the Motif Atlas
- Homologous match to IL_4LFB_011
- Geometric discrepancy: 0.0764
- The information below is about IL_4LFB_011
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.4
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8VTX|1|1a|C|242
8VTX|1|1a|A|243
8VTX|1|1a|U|244
8VTX|1|1a|C|245
8VTX|1|1a|A|246
8VTX|1|1a|G|247
*
8VTX|1|1a|C|277
8VTX|1|1a|G|278
8VTX|1|1a|A|279
8VTX|1|1a|C|280
8VTX|1|1a|G|281
8VTX|1|1a|A|282
8VTX|1|1a|C|283
8VTX|1|1a|G|284
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1l
- 30S ribosomal protein S12
- Chain 1q
- 30S ribosomal protein S17
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