IL_8VTX_179

3D structure

PDB id

8VTX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with macrolone MCX-128, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GGGAG*CGUGGAUC

Length

13 nucleotides

Bulged bases

8VTX|1|2A|G|100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VTX_179 not in the Motif Atlas

Homologous match to IL_8VTW_004

Geometric discrepancy: 0.0578

The information below is about IL_8VTW_004

Detailed Annotation

Kink-turn

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

8VTX|1|2A|G|81
8VTX|1|2A|G|82
8VTX|1|2A|G|83
8VTX|1|2A|A|84
8VTX|1|2A|G|85
*
8VTX|1|2A|C|97
8VTX|1|2A|G|98
8VTX|1|2A|U|99
8VTX|1|2A|G|100
8VTX|1|2A|G|102
8VTX|1|2A|A|103
8VTX|1|2A|U|104
8VTX|1|2A|C|105

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 22

50S ribosomal protein L29

Chain 2Y

50S ribosomal protein L24