IL_8VTX_233

3D structure

PDB id

8VTX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with macrolone MCX-128, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

8VTX|1|2A|C|1543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VTX_233 not in the Motif Atlas

Geometric match to IL_7RQB_063

Geometric discrepancy: 0.0634

The information below is about IL_7RQB_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02656.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8VTX|1|2A|G|1526
8VTX|1|2A|G|1527
8VTX|1|2A|A|1528
8VTX|1|2A|A|1528|||A
8VTX|1|2A|G|1529
*
8VTX|1|2A|U|1540
8VTX|1|2A|G|1541
8VTX|1|2A|A|1542
8VTX|1|2A|C|1543
8VTX|1|2A|A|1544
8VTX|1|2A|A|1545
8VTX|1|2A|C|1546

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains