IL_8VTX_235

3D structure

PDB id

8VTX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with macrolone MCX-128, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GAGAAC*GAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VTX_235 not in the Motif Atlas

Homologous match to IL_8VTW_063

Geometric discrepancy: 0.0413

The information below is about IL_8VTW_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.3

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8VTX|1|2A|G|1651
8VTX|1|2A|A|1652
8VTX|1|2A|G|1653
8VTX|1|2A|A|1654
8VTX|1|2A|A|1655
8VTX|1|2A|C|1656
*
8VTX|1|2A|G|2004
8VTX|1|2A|A|2005
8VTX|1|2A|C|2006

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2R

50S ribosomal protein L17