IL_8VTX_268

3D structure

PDB id

8VTX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with macrolone MCX-128, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

8VTX|1|2A|G|2576, 8VTX|1|2A|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VTX_268 not in the Motif Atlas

Homologous match to IL_8VTW_096

Geometric discrepancy: 0.0316

The information below is about IL_8VTW_096

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

8VTX|1|2A|C|2510
8VTX|1|2A|U|2511
8VTX|1|2A|C|2512
*
8VTX|1|2A|G|2574
8VTX|1|2A|C|2575
8VTX|1|2A|G|2576
8VTX|1|2A|A|2577
8VTX|1|2A|G|2578

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2E

50S ribosomal protein L3