IL_8VTX_370

3D structure

PDB id

8VTX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with macrolone MCX-128, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

8VTX|1|1A|U|2132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VTX_370 not in the Motif Atlas

Homologous match to IL_3U4M_004

Geometric discrepancy: 0.4395

The information below is about IL_3U4M_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

8VTX|1|1A|C|2129
8VTX|1|1A|U|2130
8VTX|1|1A|G|2131
8VTX|1|1A|U|2132
8VTX|1|1A|G|2133
8VTX|1|1A|A|2134
8VTX|1|1A|A|2135
8VTX|1|1A|C|2136
*
8VTX|1|1A|G|2155
8VTX|1|1A|G|2156
8VTX|1|1A|G|2157
8VTX|1|1A|A|2158
8VTX|1|1A|G|2159

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains