IL_8VTY_114
3D structure
- PDB id
- 8VTY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ciprofloxacin and protein Y at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CGAUGGUAC*GGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VTY_114 not in the Motif Atlas
- Homologous match to IL_8VTW_114
- Geometric discrepancy: 0.0256
- The information below is about IL_8VTW_114
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.5
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
8VTY|1|1B|C|71
8VTY|1|1B|G|72
8VTY|1|1B|A|73
8VTY|1|1B|U|74
8VTY|1|1B|G|75
8VTY|1|1B|G|76
8VTY|1|1B|U|77
8VTY|1|1B|A|78
8VTY|1|1B|C|79
*
8VTY|1|1B|G|98
8VTY|1|1B|G|99
8VTY|1|1B|A|100
8VTY|1|1B|G|101
8VTY|1|1B|A|102
8VTY|1|1B|G|103
8VTY|1|1B|U|104
8VTY|1|1B|A|105
8VTY|1|1B|G|106
Current chains
- Chain 1B
- 5S Ribosomal RNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1Q
- 50S ribosomal protein L16
- Chain 1Z
- 50S ribosomal protein L25
Coloring options: