IL_8VTY_181

3D structure

PDB id

8VTY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ciprofloxacin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VTY_181 not in the Motif Atlas

Homologous match to IL_8VTW_007

Geometric discrepancy: 0.047

The information below is about IL_8VTW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8VTY|1|2A|U|239
8VTY|1|2A|G|240
8VTY|1|2A|A|241
8VTY|1|2A|G|242
8VTY|1|2A|U|243
8VTY|1|2A|A|244
8VTY|1|2A|G|245
*
8VTY|1|2A|C|253
8VTY|1|2A|G|254
8VTY|1|2A|A|255
8VTY|1|2A|A|256
8VTY|1|2A|A|257
8VTY|1|2A|G|258

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L35

Chain 2P

50S ribosomal protein L15