IL_8VTY_249

3D structure

PDB id

8VTY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ciprofloxacin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAAA(5MU)UC(5MC)UUG*C(5MC)UG

Length

16 nucleotides

Bulged bases

8VTY|1|2A|A|1938, 8VTY|1|2A|U|1944, 8VTY|1|2A|U|1963

QA status

Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VTY_249 not in the Motif Atlas

Geometric match to IL_4WF9_077

Geometric discrepancy: 0.1187

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.1

Basepair signature

cWW-L-R-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

8

Unit IDs

8VTY|1|2A|C|1934
8VTY|1|2A|G|1935
8VTY|1|2A|A|1936
8VTY|1|2A|A|1937
8VTY|1|2A|A|1938
8VTY|1|2A|5MU|1939
8VTY|1|2A|U|1940
8VTY|1|2A|C|1941
8VTY|1|2A|5MC|1942
8VTY|1|2A|U|1943
8VTY|1|2A|U|1944
8VTY|1|2A|G|1945
*
8VTY|1|2A|C|1961
8VTY|1|2A|5MC|1962
8VTY|1|2A|U|1963
8VTY|1|2A|G|1964

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA