IL_8VTY_258

3D structure

PDB id

8VTY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ciprofloxacin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

8VTY|1|2A|G|2116

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VTY_258 not in the Motif Atlas

Geometric match to IL_1MZP_002

Geometric discrepancy: 0.3633

The information below is about IL_1MZP_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

8VTY|1|2A|G|2110
8VTY|1|2A|C|2111
8VTY|1|2A|G|2112
8VTY|1|2A|U|2113
8VTY|1|2A|A|2114
8VTY|1|2A|G|2115
8VTY|1|2A|G|2116
8VTY|1|2A|A|2117
8VTY|1|2A|U|2118
8VTY|1|2A|A|2119
8VTY|1|2A|G|2120
*
8VTY|1|2A|C|2178
8VTY|1|2A|C|2179

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains