IL_8VTY_277

3D structure

PDB id

8VTY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ciprofloxacin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CCUCU*AUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VTY_277 not in the Motif Atlas

Homologous match to IL_8VTW_103

Geometric discrepancy: 0.0384

The information below is about IL_8VTW_103

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.9

Basepair signature

cWW-cWS-cHS-L-cWW-tWH

Number of instances in this motif group

15

Unit IDs

8VTY|1|2A|C|2680
8VTY|1|2A|C|2681
8VTY|1|2A|U|2682
8VTY|1|2A|C|2683
8VTY|1|2A|U|2684
*
8VTY|1|2A|A|2725
8VTY|1|2A|U|2726
8VTY|1|2A|G|2727

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2O

50S ribosomal protein L14

Chain 2R

50S ribosomal protein L17

Chain 2T

50S ribosomal protein L19