IL_8VTY_280

3D structure

PDB id

8VTY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ciprofloxacin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

8VTY|1|2A|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VTY_280 not in the Motif Atlas

Homologous match to IL_8VTW_106

Geometric discrepancy: 0.0425

The information below is about IL_8VTW_106

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49767.7

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8VTY|1|2A|G|2737
8VTY|1|2A|A|2738
8VTY|1|2A|U|2739
8VTY|1|2A|A|2740
8VTY|1|2A|A|2741
8VTY|1|2A|C|2742
*
8VTY|1|2A|G|2762
8VTY|1|2A|G|2763
8VTY|1|2A|A|2764
8VTY|1|2A|A|2765
8VTY|1|2A|G|2766
8VTY|1|2A|C|2767

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6

Chain 2N

50S ribosomal protein L13