IL_8VUP_029
3D structure
- PDB id
- 8VUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CUAAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- 8VUP|1|1|A|1156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VUP_029 not in the Motif Atlas
- Geometric match to IL_4WF9_036
- Geometric discrepancy: 0.1538
- The information below is about IL_4WF9_036
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_08938.1
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 22
Unit IDs
8VUP|1|1|C|998
8VUP|1|1|U|999
8VUP|1|1|A|1000
8VUP|1|1|A|1001
8VUP|1|1|G|1002
*
8VUP|1|1|C|1153
8VUP|1|1|G|1154
8VUP|1|1|A|1155
8VUP|1|1|A|1156
8VUP|1|1|G|1157
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain Q
- Large ribosomal subunit protein bL20
- Chain R
- Ribosomal protein L21
- Chain Z
- 50S ribosomal protein L30
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