3D structure

PDB id
8VUP (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CUGCGAAG*UGGAG
Length
13 nucleotides
Bulged bases
8VUP|1|1|C|1211
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8VUP_040 not in the Motif Atlas
Geometric match to IL_5J7L_288
Geometric discrepancy: 0.135
The information below is about IL_5J7L_288
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_70923.9
Basepair signature
cWW-tSS-tSH-L-tHS-tHS-cWW
Number of instances in this motif group
27

Unit IDs

8VUP|1|1|C|1208
8VUP|1|1|U|1209
8VUP|1|1|G|1210
8VUP|1|1|C|1211
8VUP|1|1|G|1212
8VUP|1|1|A|1213
8VUP|1|1|A|1214
8VUP|1|1|G|1215
*
8VUP|1|1|U|1234
8VUP|1|1|G|1235
8VUP|1|1|G|1236
8VUP|1|1|A|1237
8VUP|1|1|G|1238

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain Q
Large ribosomal subunit protein bL20

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1174 s