IL_8VUP_042

3D structure

PDB id

8VUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

8VUP|1|1|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VUP_042 not in the Motif Atlas

Geometric match to IL_5J7L_291

Geometric discrepancy: 0.1619

The information below is about IL_5J7L_291

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

8VUP|1|1|C|1319
8VUP|1|1|C|1320
8VUP|1|1|A|1321
8VUP|1|1|A|1322
8VUP|1|1|C|1323
*
8VUP|1|1|G|1331
8VUP|1|1|G|1332
8VUP|1|1|G|1333

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain S

50S ribosomal protein L22

Chain T

Large ribosomal subunit protein uL23