IL_8VUP_087
3D structure
- PDB id
- 8VUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CCAAG*CGACG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VUP_087 not in the Motif Atlas
- Geometric match to IL_7A0S_087
- Geometric discrepancy: 0.1948
- The information below is about IL_7A0S_087
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
8VUP|1|1|C|2466
8VUP|1|1|C|2467
8VUP|1|1|A|2468
8VUP|1|1|A|2469
8VUP|1|1|G|2470
*
8VUP|1|1|C|2480
8VUP|1|1|G|2481
8VUP|1|1|A|2482
8VUP|1|1|C|2483
8VUP|1|1|G|2484
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain M
- 50S ribosomal protein L16
- Chain f
- 50S ribosomal protein L36
Coloring options: