IL_8VUP_114

3D structure

PDB id

8VUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

8VUP|1|2|U|244, 8VUP|1|2|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VUP_114 not in the Motif Atlas

Geometric match to IL_4LFB_011

Geometric discrepancy: 0.1561

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.4

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

8VUP|1|2|G|242
8VUP|1|2|A|243
8VUP|1|2|U|244
8VUP|1|2|U|245
8VUP|1|2|A|246
8VUP|1|2|G|247
*
8VUP|1|2|C|277
8VUP|1|2|G|278
8VUP|1|2|A|279
8VUP|1|2|C|280
8VUP|1|2|G|281
8VUP|1|2|A|282
8VUP|1|2|U|283
8VUP|1|2|C|284

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain q

Small ribosomal subunit protein uS12

Chain v

30S ribosomal protein S17