IL_8VUP_123

3D structure

PDB id

8VUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

8VUP|1|2|U|531, 8VUP|1|2|A|532, 8VUP|1|2|U|534

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VUP_123 not in the Motif Atlas

Geometric match to IL_4LFB_021

Geometric discrepancy: 0.319

The information below is about IL_4LFB_021

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_52042.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8VUP|1|2|G|515
8VUP|1|2|U|516
8VUP|1|2|G|517
8VUP|1|2|C|518
8VUP|1|2|C|519
8VUP|1|2|A|520
8VUP|1|2|G|521
*
8VUP|1|2|C|528
8VUP|1|2|G|529
8VUP|1|2|G|530
8VUP|1|2|U|531
8VUP|1|2|A|532
8VUP|1|2|A|533
8VUP|1|2|U|534
8VUP|1|2|A|535
8VUP|1|2|C|536

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain h

Small ribosomal subunit protein uS3

Chain q

Small ribosomal subunit protein uS12