IL_8VUP_141

3D structure

PDB id

8VUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8VUP|1|2|U|1049

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VUP_141 not in the Motif Atlas

Geometric match to IL_3MEI_001

Geometric discrepancy: 0.2881

The information below is about IL_3MEI_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8VUP|1|2|G|1048
8VUP|1|2|U|1049
8VUP|1|2|G|1050
*
8VUP|1|2|C|1208
8VUP|1|2|C|1209

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain s

Small ribosomal subunit protein uS14