IL_8VV4_064
3D structure
- PDB id
- 8VV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CGUAAC*GGAGAAG
- Length
- 13 nucleotides
- Bulged bases
- 8VV4|1|1|G|1699
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VV4_064 not in the Motif Atlas
- Geometric match to IL_9DFE_068
- Geometric discrepancy: 0.0913
- The information below is about IL_9DFE_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_20700.1
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
8VV4|1|1|C|1686
8VV4|1|1|G|1687
8VV4|1|1|U|1688
8VV4|1|1|A|1689
8VV4|1|1|A|1690
8VV4|1|1|C|1691
*
8VV4|1|1|G|1696
8VV4|1|1|G|1697
8VV4|1|1|A|1698
8VV4|1|1|G|1699
8VV4|1|1|A|1700
8VV4|1|1|A|1701
8VV4|1|1|G|1702
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain B
- 50S ribosomal protein L2
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