IL_8VV4_072

3D structure

PDB id

8VV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VV4_072 not in the Motif Atlas

Geometric match to IL_5J7L_387

Geometric discrepancy: 0.1067

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8VV4|1|1|U|1851
8VV4|1|1|U|1852
8VV4|1|1|A|1853
8VV4|1|1|A|1854
8VV4|1|1|U|1855
8VV4|1|1|U|1856
8VV4|1|1|G|1857
8VV4|1|1|A|1858
8VV4|1|1|U|1859
8VV4|1|1|G|1860
*
8VV4|1|1|U|1882
8VV4|1|1|U|1883
8VV4|1|1|G|1884
8VV4|1|1|A|1885
8VV4|1|1|U|1886
8VV4|1|1|C|1887
8VV4|1|1|G|1888
8VV4|1|1|A|1889
8VV4|1|1|A|1890
8VV4|1|1|G|1891

Current chains

Chain 1

23S ribosomal RNA

Nearby chains