IL_8VV4_118

3D structure

PDB id

8VV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8VV4|1|2|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VV4_118 not in the Motif Atlas

Geometric match to IL_5J7L_012

Geometric discrepancy: 0.1525

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8VV4|1|2|G|147
8VV4|1|2|G|148
8VV4|1|2|A|149
8VV4|1|2|U|150
8VV4|1|2|A|151
8VV4|1|2|A|152
8VV4|1|2|C|153
*
8VV4|1|2|G|168
8VV4|1|2|C|169
8VV4|1|2|U|170
8VV4|1|2|A|171
8VV4|1|2|A|172
8VV4|1|2|U|173
8VV4|1|2|A|174
8VV4|1|2|C|175

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain y

30S ribosomal protein S20