IL_8VV4_120

3D structure

PDB id

8VV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

8VV4|1|2|U|244, 8VV4|1|2|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VV4_120 not in the Motif Atlas

Geometric match to IL_5J7L_014

Geometric discrepancy: 0.154

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

8VV4|1|2|G|242
8VV4|1|2|A|243
8VV4|1|2|U|244
8VV4|1|2|U|245
8VV4|1|2|A|246
8VV4|1|2|G|247
*
8VV4|1|2|C|277
8VV4|1|2|G|278
8VV4|1|2|A|279
8VV4|1|2|C|280
8VV4|1|2|G|281
8VV4|1|2|A|282
8VV4|1|2|U|283
8VV4|1|2|C|284

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain q

Small ribosomal subunit protein uS12

Chain v

Small ribosomal subunit protein uS17