IL_8VV4_131

3D structure

PDB id

8VV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

8VV4|1|2|A|532, 8VV4|1|2|U|534, 8VV4|1|2|A|535

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VV4_131 not in the Motif Atlas

Geometric match to IL_8P9A_404

Geometric discrepancy: 0.174

The information below is about IL_8P9A_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52042.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8VV4|1|2|G|515
8VV4|1|2|PSU|516
8VV4|1|2|G|517
8VV4|1|2|C|518
8VV4|1|2|C|519
8VV4|1|2|A|520
8VV4|1|2|G|521
*
8VV4|1|2|C|528
8VV4|1|2|G|529
8VV4|1|2|G|530
8VV4|1|2|U|531
8VV4|1|2|A|532
8VV4|1|2|A|533
8VV4|1|2|U|534
8VV4|1|2|A|535
8VV4|1|2|C|536

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain h

30S ribosomal protein S3

Chain q

Small ribosomal subunit protein uS12