IL_8VV4_135

3D structure

PDB id

8VV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GU*AUAC

Length

6 nucleotides

Bulged bases

8VV4|1|2|U|641

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VV4_135 not in the Motif Atlas

Geometric match to IL_9DFE_073

Geometric discrepancy: 0.215

The information below is about IL_9DFE_073

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_24264.1

Basepair signature

cWW-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

8VV4|1|2|G|597
8VV4|1|2|U|598
*
8VV4|1|2|A|640
8VV4|1|2|U|641
8VV4|1|2|A|642
8VV4|1|2|C|643

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S8

Chain v

Small ribosomal subunit protein uS17