IL_8VVP_007
3D structure
- PDB id
- 8VVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CC*GAG
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVP_007 not in the Motif Atlas
- Geometric match to IL_8CRE_004
- Geometric discrepancy: 0.1149
- The information below is about IL_8CRE_004
- Detailed Annotation
- Single stack bend
- Broad Annotation
- No text annotation
- Motif group
- IL_90729.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 30
Unit IDs
8VVP|1|WA|C|26
8VVP|1|WA|C|27
*
8VVP|1|WA|G|55
8VVP|1|WA|A|56
8VVP|1|WA|G|57
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain GA
- L35
- Chain IA
- L37
- Chain K
- L13
- Chain M
- L15
- Chain YA
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: