IL_8VVP_009
3D structure
- PDB id
- 8VVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUCAGUAA*UGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVP_009 not in the Motif Atlas
- Geometric match to IL_1JBR_001
- Geometric discrepancy: 0.1206
- The information below is about IL_1JBR_001
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.3
- Basepair signature
- cWW-cWW-tSH-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 20
Unit IDs
8VVP|1|WA|C|81
8VVP|1|WA|U|82
8VVP|1|WA|C|83
8VVP|1|WA|A|84
8VVP|1|WA|G|85
8VVP|1|WA|U|86
8VVP|1|WA|A|87
8VVP|1|WA|A|88
*
8VVP|1|WA|U|96
8VVP|1|WA|G|97
8VVP|1|WA|A|98
8VVP|1|WA|A|99
8VVP|1|WA|C|100
8VVP|1|WA|A|101
8VVP|1|WA|G|102
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain K
- L13
- Chain M
- L15
- Chain P
- eL18
- Chain Z
- L27a
Coloring options: