IL_8VVP_025

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUC*GCUAC

Length

9 nucleotides

Bulged bases

8VVP|1|WA|A|1305

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVP_025 not in the Motif Atlas

Geometric match to IL_8P9A_419

Geometric discrepancy: 0.3575

The information below is about IL_8P9A_419

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8VVP|1|WA|G|443
8VVP|1|WA|G|444
8VVP|1|WA|U|445
8VVP|1|WA|C|446
*
8VVP|1|WA|G|1302
8VVP|1|WA|C|1303
8VVP|1|WA|U|1304
8VVP|1|WA|A|1305
8VVP|1|WA|C|1306

Current chains

Chain WA

28S rRNA

Nearby chains

Chain DA

L32

Chain EA

eL33

Chain YA

5.8S ribosomal RNA; 5.8S rRNA