IL_8VVP_032

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GG*CGACC

Length

7 nucleotides

Bulged bases

8VVP|1|WA|G|667, 8VVP|1|WA|A|668, 8VVP|1|WA|C|669

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVP_032 not in the Motif Atlas

Geometric match to IL_8CRE_398

Geometric discrepancy: 0.2155

The information below is about IL_8CRE_398

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

8VVP|1|WA|G|488
8VVP|1|WA|G|489
*
8VVP|1|WA|C|666
8VVP|1|WA|G|667
8VVP|1|WA|A|668
8VVP|1|WA|C|669
8VVP|1|WA|C|670

Current chains

Chain WA

28S rRNA

Nearby chains

Chain C

uL4

Chain P

eL18

Chain PA

L28