IL_8VVP_042
3D structure
- PDB id
- 8VVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAAGGUGG*UGUUACAGC
- Length
- 17 nucleotides
- Bulged bases
- 8VVP|1|WA|G|750, 8VVP|1|WA|C|918
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVP_042 not in the Motif Atlas
- Geometric match to IL_8CRE_022
- Geometric discrepancy: 0.1518
- The information below is about IL_8CRE_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_43858.1
- Basepair signature
- cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8VVP|1|WA|G|747
8VVP|1|WA|A|748
8VVP|1|WA|A|749
8VVP|1|WA|G|750
8VVP|1|WA|G|751
8VVP|1|WA|U|752
8VVP|1|WA|G|753
8VVP|1|WA|G|754
*
8VVP|1|WA|U|913
8VVP|1|WA|G|914
8VVP|1|WA|U|915
8VVP|1|WA|U|916
8VVP|1|WA|A|917
8VVP|1|WA|C|918
8VVP|1|WA|A|919
8VVP|1|WA|G|920
8VVP|1|WA|C|921
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain L
- eL14
- Chain R
- L18a
Coloring options: