IL_8VVP_077
3D structure
- PDB id
- 8VVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUAAG*CCAUA
- Length
- 10 nucleotides
- Bulged bases
- 8VVP|1|WA|U|2072
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVP_077 not in the Motif Atlas
- Geometric match to IL_8P9A_276
- Geometric discrepancy: 0.1213
- The information below is about IL_8P9A_276
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_08938.1
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 22
Unit IDs
8VVP|1|WA|U|1907
8VVP|1|WA|U|1908
8VVP|1|WA|A|1909
8VVP|1|WA|A|1910
8VVP|1|WA|G|1911
*
8VVP|1|WA|C|2069
8VVP|1|WA|C|2070
8VVP|1|WA|A|2071
8VVP|1|WA|U|2072
8VVP|1|WA|A|2073
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain DA
- L32
- Chain EA
- eL33
- Chain F
- uL30
- Chain P
- eL18
- Chain XA
- 5S ribosomal RNA; 5S rRNA
Coloring options: