IL_8VVP_084

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

8VVP|1|WA|A|1962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVP_084 not in the Motif Atlas

Geometric match to IL_4V9F_042

Geometric discrepancy: 0.2071

The information below is about IL_4V9F_042

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.3

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

8VVP|1|WA|U|1959
8VVP|1|WA|A|1960
8VVP|1|WA|U|1961
8VVP|1|WA|A|1962
8VVP|1|WA|G|1963
8VVP|1|WA|A|1964
8VVP|1|WA|C|1965
8VVP|1|WA|A|1966
8VVP|1|WA|G|1967
*
8VVP|1|WA|C|2024
8VVP|1|WA|C|2025
8VVP|1|WA|G|2026
8VVP|1|WA|A|2027
8VVP|1|WA|A|2028

Current chains

Chain WA

28S rRNA

Nearby chains

Chain LA

eL40

Chain b

RPLP0