IL_8VVP_086

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

8VVP|1|WA|A|2004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVP_086 not in the Motif Atlas

Geometric match to IL_1MMS_002

Geometric discrepancy: 0.2085

The information below is about IL_1MMS_002

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

8VVP|1|WA|G|2003
8VVP|1|WA|A|2004
8VVP|1|WA|G|2005
8VVP|1|WA|U|2006
8VVP|1|WA|G|2007
*
8VVP|1|WA|C|2016
8VVP|1|WA|U|2017
8VVP|1|WA|C|2018

Current chains

Chain WA

28S rRNA

Nearby chains

Chain RA

L12