IL_8VVP_103

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAG*CGUG

Length

7 nucleotides

Bulged bases

8VVP|1|WA|U|2689

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVP_103 not in the Motif Atlas

Homologous match to IL_8GLP_099

Geometric discrepancy: 0.2013

The information below is about IL_8GLP_099

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87316.4

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

8VVP|1|WA|C|2648
8VVP|1|WA|A|2649
8VVP|1|WA|G|2650
*
8VVP|1|WA|C|2687
8VVP|1|WA|G|2688
8VVP|1|WA|U|2689
8VVP|1|WA|G|2690

Current chains

Chain WA

28S rRNA

Nearby chains

Chain FA

L34