IL_8VVP_107
3D structure
- PDB id
- 8VVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AACAAUG*CUAU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVP_107 not in the Motif Atlas
- Geometric match to IL_8P9A_302
- Geometric discrepancy: 0.1105
- The information below is about IL_8P9A_302
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_89862.1
- Basepair signature
- cWW-L-tHS-L-R-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
8VVP|1|WA|A|2834
8VVP|1|WA|A|2835
8VVP|1|WA|C|2836
8VVP|1|WA|A|2837
8VVP|1|WA|A|2838
8VVP|1|WA|U|2839
8VVP|1|WA|G|2840
*
8VVP|1|WA|C|3852
8VVP|1|WA|U|3853
8VVP|1|WA|A|3854
8VVP|1|WA|U|3855
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain B
- uL2
- Chain CA
- L31
- Chain O
- uL22
Coloring options: