IL_8VVP_127

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

8VVP|1|WA|A|4387

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVP_127 not in the Motif Atlas

Geometric match to IL_8P9A_322

Geometric discrepancy: 0.0747

The information below is about IL_8P9A_322

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

8VVP|1|WA|G|3918
8VVP|1|WA|A|3919
*
8VVP|1|WA|U|4386
8VVP|1|WA|A|4387
8VVP|1|WA|C|4388
8VVP|1|WA|C|4389

Current chains

Chain WA

28S rRNA

Nearby chains

Chain A

uL3

Chain SA

Transfer RNA; tRNA