IL_8VVP_145
3D structure
- PDB id
- 8VVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAUUG*CCAAGCG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVP_145 not in the Motif Atlas
- Geometric match to IL_8GLP_315
- Geometric discrepancy: 0.0659
- The information below is about IL_8GLP_315
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_56912.1
- Basepair signature
- cWW-cWW-L-R-L-cWW-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8VVP|1|WA|C|4468
8VVP|1|WA|A|4469
8VVP|1|WA|U|4470
8VVP|1|WA|U|4471
8VVP|1|WA|G|4472
*
8VVP|1|WA|C|4487
8VVP|1|WA|C|4488
8VVP|1|WA|A|4489
8VVP|1|WA|A|4490
8VVP|1|WA|G|4491
8VVP|1|WA|C|4492
8VVP|1|WA|G|4493
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain B
- uL2
- Chain H
- L9
- Chain LA
- eL40
- Chain N
- uL13
- Chain U
- L23
Coloring options: