IL_8VVP_150

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

8VVP|1|WA|C|4722

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVP_150 not in the Motif Atlas

Geometric match to IL_8P9A_342

Geometric discrepancy: 0.1682

The information below is about IL_8P9A_342

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

8VVP|1|WA|C|4584
8VVP|1|WA|C|4585
8VVP|1|WA|A|4586
8VVP|1|WA|U|4587
*
8VVP|1|WA|A|4719
8VVP|1|WA|G|4720
8VVP|1|WA|G|4721
8VVP|1|WA|C|4722
8VVP|1|WA|G|4723

Current chains

Chain WA

28S rRNA

Nearby chains

Chain B

uL2

Chain N

uL13