IL_8VVP_157

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

8VVP|1|WA|A|4710

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVP_157 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.2299

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8VVP|1|WA|G|4682
8VVP|1|WA|A|4683
8VVP|1|WA|U|4684
8VVP|1|WA|U|4685
8VVP|1|WA|A|4686
8VVP|1|WA|U|4687
*
8VVP|1|WA|A|4707
8VVP|1|WA|G|4708
8VVP|1|WA|A|4709
8VVP|1|WA|A|4710
8VVP|1|WA|U|4711
8VVP|1|WA|C|4712

Current chains

Chain WA

28S rRNA

Nearby chains

Chain H

L9

Chain LA

eL40

Chain N

uL13